Contents: [slideshow]

The Nature of a HPC System

Batch/Queue Systems: SGE

Running Parallel Jobs under SGE

GUIs and Qrsh

Filesystem Usage and Quotas

Practical Session




About this document

How do I run a job on a HPC machine?

Parallel Jobs under SGE: OpenMPI on Mace01

#!/bin/bash

#$ -pe orte 8
#$ -q parallel-R4.q
#$ -cwd
#$ -S /bin/bash

export LD_LIBRARY_PATH=/opt/intel/fce/10.1.012/lib
    # ...environ. var. to ensure ifort-related .so libs found...

/usr/local/openmpi-1.3--ifort-v10--gcc-v3/bin/mpirun \
    -np $NSLOTS myprog
    #
    # -- All on ONE line!
    # -- Many "mpirun"s on system --- ensure we get right one...


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