Contents:
[
slideshow
]
How do I run a job on a HPC machine
Log in to the HPC machine using SSH
Copy files to/from the machine
The Nature of a HPC System
The Nature of a HPC System
Actually, it's a cluster
Sharing Resources
Batch/Queue Systems: SGE
Batch/Queue Systems
Job Submission
Example: SGE
SGE: Demo 1/2
SGE: Demo 2/2
Qsub Files 1/2
Qsub Files 2/2
Creating a Qsub File
Running Parallel Jobs under SGE
Parallel Jobs under SGE: OpenMPI on Mace01
Parallel Jobs under SGE: MPICHv1 on Mace01
Parallel Jobs under SGE: MPICHv1 on Man2
GUIs and Qrsh
Where's the GUI?
GUIs and Qrsh
Qrsh Examples
Filesystem Usage and Quotas
Filesystem Usage and Quotas
How much space am I using?
File Quotas
Reaching Your File Quota Limit
Practical Session
Practical Session 1/2
Practical Session 2/2
About this document
How do I run a job on a HPC machine?
Copy files to/from the machine
From Linux command-line:
desktop> scp myfile <username>@<hostname>:myfiletoo
or — N.B. "
:
"
desktop> scp myfile <username>@<hostname>:
From Linux GUI:
GNOME: gFTP;
KDE: Konqueror, e.g.,
sftp://mace01.mace.manchester.ac.uk
From MS Windows:
Use
WinSCP
.
More
More on
SSH, SCP and SFTP
.
Or, use a
network-transparent editor
. . .
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