Contents:
[
slideshow
]
How do I run a job on a HPC machine
Log in to the HPC machine using SSH
Copy files to/from the machine
The Nature of a HPC System
The Nature of a HPC System
Actually, it's a cluster
Sharing Resources
Batch/Queue Systems: SGE
Batch/Queue Systems
Job Submission
Example: SGE
SGE: Demo 1/2
SGE: Demo 2/2
Qsub Files 1/2
Qsub Files 2/2
Creating a Qsub File
Running Parallel Jobs under SGE
Parallel Jobs under SGE: OpenMPI on Mace01
Parallel Jobs under SGE: MPICHv1 on Mace01
Parallel Jobs under SGE: MPICHv1 on Man2
GUIs and Qrsh
Where's the GUI?
GUIs and Qrsh
Qrsh Examples
Filesystem Usage and Quotas
Filesystem Usage and Quotas
How much space am I using?
File Quotas
Reaching Your File Quota Limit
Practical Session
Practical Session 1/2
Practical Session 2/2
About this document
How do I run a job on a HPC machine?
Creating a Qsub File
A Recipe
Login to remote HPC system:
desktop> ssh <username>@<remote-host> -X # ...don't forget the "-X"...
Use
gedit
, available on most Linux systems (inc. Mace01, Man2, Redqueen).
gedit
is similar to MS Notepad/Wordpad.
Requires X-Windows.
More:
editors
X-Windows
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